A simple analysis of fish DNA in water drawn from two New York rivers successfully tracked the presence or absence of numerous species during a spring marine migration, according to research published Wednesday.<\/p>\n
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The inexpensive technique, which can have broad applications in monitoring and protecting aquatic life, was conducted in the East River, which is actually an inlet, and the Hudson River last year.<\/p>\n
\u201cBy conducting a series of tests over time, collecting surface water from the same point on both the Hudson and East Rivers once a week for six months, we\u2019ve successfully demonstrated a novel way to record fish migration,\u201d said the researchers at New York\u2019s Rockefeller University, whose work appeared in the latest issue of scientific journal PLOS One.<\/p>\n
The weekly \u201csnapshots\u201d came from water samples filtered to concentrate the DNA left behind by the slimy surface of fish as they swim, or from their droppings. The DNA was then extracted and sequenced, with the results matched against an online public reference library.<\/p>\n
The researchers\u2019 data largely corresponded to findings from years of migration studies conducted by fishnet trawls, the traditional method of tracking marine migration. This is much more labor intensive, expensive and harmful to fish.<\/p>\n
\u201cEnvironmental DNA\u201d sampling will be an easy way to estimate the population and distribution of fish and other aquatic species in bodies of water from rivers and lakes to seas and oceans, the authors said.<\/p>\n
\u201cIt amazes me that we can get the same information from a small cup of water and a large net full of fish,\u201d said Mark Stoeckle, lead author and senior research associate for the Program for the Human Environment at Rockefeller University.<\/p>\n
\u201cOur work also offers clear new insight into the durability of DNA in the water, which persists despite currents and tides with a \u2018Goldilocks\u2019 quality just right for research,\u201d he said, telling AFP that experiments carried out in aquariums showed DNA survives for a few days or even a week.<\/p>\n
Stoeckle\u2019s study was inspired by French scientist Pierre Tabarlet of the University of Grenoble, who was the first to show that small volumes of water contained enough DNA fragments to detect dozens of species of fish.<\/p>\n
The New York research obtained DNA from 42 species of fish, including 81 percent of those known to be common to the area, such as herring, striped bass and oyster toadfish \u2014 a flattened brown creature with bulging eyes and a mouthful of teeth.<\/p>\n
Uncommon species were also detected, while some DNA came from fish frequently consumed by New Yorkers but not naturally present in the East and Hudson Rivers, such as salmon, tilapia and red snapper.<\/p>\n
The researchers determined these latter samples likely entered the water after passing through humans and being discharged in wastewater.<\/p>\n
The eDNA technique could allow researchers to identify endangered species sold in markets and restaurants, said Jesse Ausubel, another Rockefeller University researcher and study co-author.<\/p>\n
Next steps involve refining the technology by comparing more eDNA results against the findings from traditional studies carried out with nets and sonar.<\/p>\n
\u201cIt is unclear, for example, if 100 DNA \u2018reads\u2019 indicate the presence of one fish or 10 fish,\u201d researchers said.<\/p>\n
Ausubel said that stage will take five to 10 years but \u201cthe upside potential is just enormous.\u201d<\/p>\n
\u201cIt could easily improve the rationality with which fish quotas are set and the quality and reliability of their monitoring around the world,\u201d he said.<\/p>\n
For Tony MacDonald, director of the Urban Coast Institute at Monmouth University, the science of eDNA sampling \u201crepresents a potentially important advance in our capability to detect, understand and more effectively and efficiently manage fisheries and marine biodiversity.\u201d\u2014AFP<\/p>\n
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